Up until three days ago, I was able to use ucscTableQuery to obtain track data for a given gene via: library(rtracklayer) library(TxDb.Hsapiens.UCSC.hg38.knownGene ...
We would like to acknowledge Jürgen Ripperger (University of Fribourg, Switzerland) for helpful discussions and the suggestion on the role of Per2 antisense, Maxime Jan (University of Lausanne, ...
Paternal obesity has been implicated in adult-onset metabolic disease in offspring. However, the molecular mechanisms driving these paternal effects and the developmental processes involved remain ...
Hi @sakuramodokich Thanks for reporting it. It seems UCSC is redirecting HTTP to HTTPS because of that, rtracklayer could not get the right HTML content. I have crated a PR to fix it.
1Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut. Search for other works by this author on: 1Program in Computational Biology and Bioinformatics, Yale ...
Vaccine development against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been of primary importance to contain the ongoing global pandemic. However, studies have demonstrated that ...
Globally, SARS-CoV-2 has moved from one tide to another with ebbs in between. Genomic surveillance has greatly aided the detection and tracking of the virus and the identification of the variants of ...
Brain development is regulated by conserved transcriptional programs across species, but little is known about the divergent mechanisms that create species-specific characteristics. Among brain ...
The rtracklayer package supports the integration of existing genome browsers with experimental data analyses performed in R. The user may (i) transfer annotation tracks to and from a genome browser ...
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